STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0123PFAM: peptidase M48, Ste24p; KEGG: rpc:RPC_0550 peptidase M48, Ste24p. (493 aa)    
Predicted Functional Partners:
RPE_0122
KEGG: rpc:RPC_0551 nuclease (SNase-like).
 
     0.796
RPE_1988
KEGG: rpc:RPC_2077 hypothetical protein.
  
     0.684
RPE_1408
KEGG: rpc:RPC_1401 hypothetical protein.
  
     0.671
RPE_4140
KEGG: rpc:RPC_4085 hypothetical protein.
  
     0.671
RPE_4750
PFAM: Invasion associated locus B family protein; KEGG: rpd:RPD_0813 invasion associated locus B.
  
     0.606
RPE_2333
KEGG: rpc:RPC_3126 hypothetical protein.
  
     0.590
RPE_0128
KEGG: rpc:RPC_0544 hypothetical protein.
  
     0.582
RPE_1878
KEGG: rpc:RPC_1785 hypothetical protein.
  
     0.568
RPE_2611
PFAM: Septum formation initiator; KEGG: rpc:RPC_2488 septum formation initiator.
  
     0.562
RPE_4268
TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ.
  
     0.555
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.