STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0128KEGG: rpc:RPC_0544 hypothetical protein. (303 aa)    
Predicted Functional Partners:
RPE_1878
KEGG: rpc:RPC_1785 hypothetical protein.
  
     0.767
RPE_4386
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4328 hypothetical protein.
  
     0.761
RPE_4268
TIGRFAM: flagellar export protein FliJ; KEGG: rpc:RPC_4231 flagellar export FliJ.
  
     0.744
RPE_1996
KEGG: rpc:RPC_2084 hypothetical protein.
  
     0.739
RPE_2333
KEGG: rpc:RPC_3126 hypothetical protein.
  
     0.739
RPE_2308
KEGG: rpc:RPC_3148 hypothetical protein.
  
     0.731
RPE_1755
KEGG: rpc:RPC_4024 hypothetical protein.
  
     0.723
RPE_1408
KEGG: rpc:RPC_1401 hypothetical protein.
  
     0.716
RPE_0698
KEGG: rpc:RPC_0771 hypothetical protein.
  
     0.715
RPE_1879
PFAM: protein of unknown function DUF1214; KEGG: rpc:RPC_1786 protein of unknown function DUF1214.
  
     0.714
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.