STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0133PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29. (166 aa)    
Predicted Functional Partners:
RPE_1643
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; KEGG: rpc:RPC_1615 calcium-binding EF-hand.
    
 0.946
RPE_4560
PFAM: Calcium-binding EF-hand-containing protein; KEGG: rpb:RPB_2375 calcium-binding EF-hand protein.
    
 0.946
RPE_2711
PFAM: peptidylprolyl isomerase, FKBP-type; KEGG: rpc:RPC_2532 peptidylprolyl isomerase.
    
 0.893
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
 
 
 0.868
RPE_3251
Endonuclease; KEGG: eba:ebA6352 endonuclease.
   
 0.868
apaG
PFAM: ApaG domain protein; KEGG: rpc:RPC_4913 ApaG.
  
  
 0.838
RPE_0132
KEGG: rpc:RPC_0540 cobalt chelatase, pCobT subunit; TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; SMART: von Willebrand factor, type A.
       0.808
RPE_1847
KEGG: rpc:RPC_1755 hypothetical protein.
   
 0.797
RPE_4795
SMART: WD-40 repeat protein; KEGG: rpc:RPC_4832 WD-40 repeat.
   
 0.797
RPE_0134
PFAM: protein of unknown function DUF29; KEGG: rpc:RPC_0539 protein of unknown function DUF29.
 
    
0.783
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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