STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0163PFAM: Methyltransferase type 11; KEGG: rpc:RPC_0509 methyltransferase type 11. (255 aa)    
Predicted Functional Partners:
RPE_1874
PFAM: protein of unknown function DUF1491; KEGG: rpc:RPC_1781 protein of unknown function DUF1491.
  
     0.663
RPE_3290
PFAM: DNA polymerase III chi subunit, HolC; KEGG: rpc:RPC_2315 DNA polymerase III chi subunit, HolC.
  
     0.654
gloB
Hydroxyacylglutathione hydrolase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
     
 0.650
RPE_4393
PFAM: metal-dependent phosphohydrolase, HD sub domain; KEGG: rpa:RPA1065 metal dependent phosphohydrolase.
  
     0.631
RPE_0917
TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: rpc:RPC_0896 HAD-superfamily hydrolase, subfamily IIA.
 
     0.603
RPE_2145
PFAM: protein of unknown function DUF1321; KEGG: rpc:RPC_3270 protein of unknown function DUF1321.
  
   
 0.599
RPE_0165
PFAM: protein of unknown function DUF985; KEGG: rpc:RPC_0507 protein of unknown function DUF985.
       0.589
RPE_0713
KEGG: rpc:RPC_0787 hypothetical protein.
  
     0.568
RPE_1426
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1385 periplasmic sensor signal transduction histidine kinase.
  
     0.557
RPE_3028
PFAM: protein of unknown function DUF88; KEGG: rpc:RPC_2633 protein of unknown function DUF88.
  
     0.547
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.