STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0169TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; KEGG: rpc:RPC_0503 polyhydroxyalkanoate synthesis repressor PhaR. (201 aa)    
Predicted Functional Partners:
RPE_2940
TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_2819 poly(R)-hydroxyalkanoic acid synthase, class I.
 
   
 0.817
RPE_1731
PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; KEGG: rpc:RPC_4048 poly-beta-hydroxybutyrate polymerase-like.
 
   
 0.802
RPE_0226
TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; KEGG: rpc:RPC_0356 polyhydroxyalkanoate depolymerase, intracellular.
 
   
 0.712
RPE_0167
TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; Acetoacetyl-CoA reductase; KEGG: rpc:RPC_0505 acetoacetyl-CoA reductase.
 
   
 0.595
RPE_0168
KEGG: rpc:RPC_0504 acetyl-CoA C-acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferases; PFAM: Thiolase; Belongs to the thiolase-like superfamily. Thiolase family.
 
   
 0.575
RPE_3161
KEGG: bur:Bcep18194_B2635 hypothetical protein.
 
   
 0.479
RPE_3163
PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; KEGG: rru:Rru_A1468 phosphate butyryltransferase.
  
   
 0.466
RPE_4483
PFAM: Uncharacterised conserved protein UCP032146; KEGG: rpb:RPB_4349 uncharacterised conserved protein UCP032146; Belongs to the UPF0262 family.
  
     0.423
RPE_1683
KEGG: rpc:RPC_1653 hypothetical protein.
 
     0.402
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.