STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0201Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: rpc:RPC_0473 transcriptional regulator, XRE family. (140 aa)    
Predicted Functional Partners:
RPE_0388
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; KEGG: rpc:RPC_0286 DNA polymerase III, delta subunit.
  
     0.695
RPE_2822
PFAM: SmpA/OmlA domain protein; KEGG: rpc:RPC_2672 SmpA/OmlA.
 
     0.693
RPE_0938
TIGRFAM: conserved hypothetical membrane protein; KEGG: rpc:RPC_0914 double-transmembrane region-like.
  
   
 0.663
RPE_0197
PFAM: protein of unknown function DUF448; KEGG: rpc:RPC_0479 protein of unknown function DUF448.
 
     0.659
RPE_0937
KEGG: rpc:RPC_0912 hypothetical protein.
  
     0.655
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
  
    0.649
RPE_4838
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4872 hypothetical protein.
  
   
 0.648
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
     
 0.636
RPE_0939
DUF58; KEGG: rpc:RPC_0915 DUF58.
  
     0.626
RPE_1426
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_1385 periplasmic sensor signal transduction histidine kinase.
  
     0.609
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.