STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0220PFAM: beta-lactamase; KEGG: rpc:RPC_0456 beta-lactamase. (400 aa)    
Predicted Functional Partners:
RPE_0221
KEGG: rpc:RPC_0455 hypothetical protein.
       0.586
RPE_0771
PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: bja:blr6465 putative steroid monooxygenase.
   
 0.538
RPE_1802
PFAM: HpcH/HpaI aldolase; KEGG: rpa:RPA3755 putative 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family.
  
     0.500
RPE_1701
KEGG: rpd:RPD_1858 putative acetyl-CoA acetyltransferase.
  
     0.464
RPE_0222
KEGG: rpd:RPD_0255 succinic semialdehyde dehydrogenase; TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.423
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.