STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0230PFAM: response regulator receiver; KEGG: rpa:RPA0571 two-component transcriptional regulator RegR, fis family. (184 aa)    
Predicted Functional Partners:
RPE_0229
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; KEGG: rpc:RPC_0359 periplasmic sensor signal transduction histidine kinase.
 
 0.995
RPE_4487
KEGG: rpd:RPD_4280 hypothetical protein.
  
     0.616
RPE_0641
Periplasmic sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein domain protein; KEGG: rpb:RPB_0686 signal transduction histidine kinase, nitrogen specific, NtrB.
 
 
 
 0.611
RPE_0394
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: rpc:RPC_0280 two component transcriptional regulator, winged helix family.
  
 
 
 0.584
RPE_1370
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; Hpt domain protein; PAS fold-4 domain protein; KEGG: rpc:RPC_1355 multi-sensor hybrid histidine kinase.
 
 
 
 0.514
RPE_1203
Putative CheA signal transduction histidine kinases; PFAM: Hpt domain protein.
   
 
 0.496
RPE_0227
PFAM: ABC-2 type transporter; KEGG: rpc:RPC_0357 ABC-2.
  
    0.456
RPE_3863
Phosphotransacetylase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
   
    0.453
RPE_4863
PAS/PAC sensor hybrid histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; KEGG: rpc:RPC_4889 PAS/PAC sensor hybrid histidine kinase.
 
 
 
 0.449
RPE_0308
KEGG: nha:Nham_0406 hypothetical protein.
  
     0.441
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.