STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0232SMART: von Willebrand factor, type A; KEGG: rpa:RPA0569 hypothetical protein. (372 aa)    
Predicted Functional Partners:
RPE_1306
Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 
 0.699
RPE_1307
Protoporphyrin IX magnesium-chelatase; Involved in bacteriochlorophyll biosynthesis; introduces a magnesium ion into protoporphyrin IX to yield Mg-protoporphyrin IX.
  
 
 0.699
RPE_0231
PFAM: protein of unknown function DUF1052; KEGG: rpc:RPC_0375 protein of unknown function DUF1052.
       0.618
RPE_0233
PFAM: beta-lactamase domain protein; KEGG: rpb:RPB_0715 beta-lactamase-like.
       0.551
RPE_0115
Methyltransferase type 12; PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; Methyltransferase type 11; Methyltransferase type 12; SMART: Tetratricopeptide domain protein; KEGG: nmu:Nmul_A0911 tetratricopeptide TPR_4.
 
 
 
 0.457
RPE_3357
PFAM: Patatin; KEGG: rpc:RPC_2266 patatin.
 
     0.452
RPE_0238
KEGG: rpc:RPC_0370 hypothetical protein.
  
     0.428
RPE_3003
KEGG: rpb:RPB_3156 hypothetical protein.
 
   
 0.410
RPE_4064
PFAM: Rv0623 family protein transcription factor; KEGG: rpd:RPD_1446 Rv0623-like transcription factor.
  
     0.410
vapC-4
PilT protein domain protein; Toxic component of a toxin-antitoxin (TA) system. An RNase. Belongs to the PINc/VapC protein family.
  
     0.405
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.