STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0239KEGG: rpc:RPC_0368 hypothetical protein. (390 aa)    
Predicted Functional Partners:
RPE_4522
Nitrogen-fixing NifU domain protein; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
    0.698
RPE_2347
PFAM: nitrogen-fixing NifU domain protein; KEGG: rpc:RPC_3115 nitrogen-fixing NifU-like.
   
    0.697
RPE_4524
PFAM: NifQ family protein; KEGG: rpc:RPC_4454 NifQ.
   
    0.697
RPE_3806
KEGG: rpb:RPB_3581 TrapT family, DctQ subunit, C4-dicarboxylate transport.
  
     0.670
RPE_0240
PFAM: MmgE/PrpD family protein; KEGG: rpd:RPD_0146 MmgE/PrpD.
       0.601
RPE_0557
KEGG: rpc:RPC_0152 hypothetical protein.
 
     0.593
RPE_2889
KEGG: rpd:RPD_2756 putative outer membrane protein.
  
     0.591
RPE_4823
KEGG: rpc:RPC_4859 hypothetical protein.
  
     0.580
RPE_3003
KEGG: rpb:RPB_3156 hypothetical protein.
  
     0.553
RPE_0241
Putative PAS/PAC sensor protein; PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; KEGG: rpa:RPA0561 hypothetical protein.
 
    0.538
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.