STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
katGCatalase/peroxidase HPI; Bifunctional enzyme with both catalase and broad-spectrum peroxidase activity; Belongs to the peroxidase family. Peroxidase/catalase subfamily. (730 aa)    
Predicted Functional Partners:
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase, class V; aminotransferase, class I and II; KEGG: rpc:RPC_4283 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
 0.909
RPE_4837
PFAM: Pyridoxal-dependent decarboxylase; KEGG: rpc:RPC_4871 pyridoxal-dependent decarboxylase.
    
  0.902
RPE_4176
PFAM: aminotransferase, class I and II; KEGG: rpc:RPC_4122 aminotransferase, class I and II.
     
 0.901
RPE_3770
PFAM: prephenate dehydratase; KEGG: rpc:RPC_3732 prephenate dehydratase.
     
  0.800
RPE_0252
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpc:RPC_0362 transcriptional regulator, LysR family.
     
 0.648
RPE_0191
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 0.642
RPE_3840
Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family.
    
 0.610
RPE_0459
TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rpa:RPA0073 thioredoxin; Belongs to the thioredoxin family.
    
 
 0.527
RPE_0410
PFAM: Thioredoxin domain; KEGG: rpa:RPA0267 possible thioredoxin.
    
 
 0.516
RPE_1236
PFAM: hydrogenase-1 expression HyaE; KEGG: rpd:RPD_1168 hydrogenase-1 expression HyaE; Belongs to the HupG/HyaE family.
    
 
 0.491
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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