STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0289KEGG: rpa:RPA0184 hypothetical protein. (180 aa)    
Predicted Functional Partners:
RPE_0290
TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: rpc:RPC_0183 dihydrolipoamide dehydrogenase.
       0.701
RPE_1931
KEGG: rpc:RPC_1833 hypothetical protein.
  
     0.659
RPE_0288
KEGG: rpa:RPA0183 hypothetical protein.
  
     0.654
RPE_2973
KEGG: rpc:RPC_2847 hypothetical protein.
  
     0.651
RPE_3461
KEGG: rpc:RPC_2914 hypothetical protein.
  
     0.640
RPE_0740
KEGG: rpc:RPC_0720 hypothetical protein.
  
     0.629
RPE_0648
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_0813 hypothetical protein.
  
     0.614
RPE_4593
KEGG: rpc:RPC_1137 hypothetical protein.
  
     0.613
RPE_4823
KEGG: rpc:RPC_4859 hypothetical protein.
  
     0.602
RPE_1643
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; KEGG: rpc:RPC_1615 calcium-binding EF-hand.
  
     0.600
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.