node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
RPE_0354 | rph | RPE_0354 | RPE_0353 | Non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA/RNA and avoiding chromosomal lesions. Belongs to the HAM1 NTPase family. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.990 |
RPE_0426 | RPE_0449 | RPE_0426 | RPE_0449 | PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.951 |
RPE_0426 | RPE_2500 | RPE_0426 | RPE_2500 | PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease. | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; peptidase C14, caspase catalytic subunit p20; KEGG: sat:SYN_01854 helicase. | 0.973 |
RPE_0426 | RPE_4228 | RPE_0426 | RPE_4228 | PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease. | PFAM: protein of unknown function DUF559; KEGG: rpb:RPB_1559 protein of unknown function DUF559. | 0.819 |
RPE_0426 | rnr | RPE_0426 | RPE_3380 | PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.945 |
RPE_0426 | rph | RPE_0426 | RPE_0353 | PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.970 |
RPE_0426 | rpsD | RPE_0426 | RPE_1631 | PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.961 |
RPE_0426 | rpsK | RPE_0426 | RPE_3563 | PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.958 |
RPE_0449 | RPE_0426 | RPE_0449 | RPE_0426 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease. | 0.951 |
RPE_0449 | RPE_2500 | RPE_0449 | RPE_2500 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; peptidase C14, caspase catalytic subunit p20; KEGG: sat:SYN_01854 helicase. | 0.936 |
RPE_0449 | RPE_4228 | RPE_0449 | RPE_4228 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | PFAM: protein of unknown function DUF559; KEGG: rpb:RPB_1559 protein of unknown function DUF559. | 0.927 |
RPE_0449 | dnaG | RPE_0449 | RPE_1056 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Belongs to the DnaG primase family. | 0.436 |
RPE_0449 | rnd | RPE_0449 | RPE_3278 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribonuclease D; Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides; Belongs to the RNase D family. | 0.958 |
RPE_0449 | rnr | RPE_0449 | RPE_3380 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | RNAse R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.743 |
RPE_0449 | rph | RPE_0449 | RPE_0353 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | RNAse PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.878 |
RPE_0449 | rpsD | RPE_0449 | RPE_1631 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | SSU ribosomal protein S4P; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.997 |
RPE_0449 | rpsK | RPE_0449 | RPE_3563 | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | SSU ribosomal protein S11P; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.997 |
RPE_2500 | RPE_0426 | RPE_2500 | RPE_0426 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; peptidase C14, caspase catalytic subunit p20; KEGG: sat:SYN_01854 helicase. | PFAM: 3'-5' exonuclease; KEGG: rpc:RPC_0419 3'-5' exonuclease. | 0.973 |
RPE_2500 | RPE_0449 | RPE_2500 | RPE_0449 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; peptidase C14, caspase catalytic subunit p20; KEGG: sat:SYN_01854 helicase. | SSU ribosomal protein S1P; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.936 |
RPE_2500 | RPE_4228 | RPE_2500 | RPE_4228 | PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; peptidase C14, caspase catalytic subunit p20; KEGG: sat:SYN_01854 helicase. | PFAM: protein of unknown function DUF559; KEGG: rpb:RPB_1559 protein of unknown function DUF559. | 0.867 |