STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0397Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane). (282 aa)    
Predicted Functional Partners:
RPE_2978
N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; KEGG: rpc:RPC_2853 N-acetylmuramoyl-L-alanine amidase.
    
 
 0.860
RPE_2545
TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; KEGG: rpc:RPC_2428 lipoprotein releasing system, transmembrane protein, LolC/E family.
 
 
 
 0.859
RPE_3320
PFAM: protein of unknown function DUF214; KEGG: dde:Dde_0827 ABC transporter, permease protein, putative.
   
 
 0.837
RPE_3953
PFAM: protein of unknown function DUF214; KEGG: rpa:RPA1649 predicted ABC-type transport systems, involved in lipoprotein release, permease components.
   
 
 0.837
RPE_0521
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0080 ABC transporter related.
   
 
 0.793
lolD
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   
 
 0.793
RPE_3321
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dvu:DVUA0022 ABC transporter, ATP-binding protein.
   
 
 0.793
lolD-2
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
   
 
 0.793
RPE_0461
DNA helicase/exodeoxyribonuclease V, subunit B; KEGG: rpc:RPC_0386 hypothetical protein.
 
     0.782
lptD
Organic solvent tolerance protein; Involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane; Belongs to the LptD family.
  
   
 0.769
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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