STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0401PFAM: DNA polymerase, beta domain protein region; KEGG: rpc:RPC_0273 DNA polymerase, beta-like region. (122 aa)    
Predicted Functional Partners:
RPE_0400
PFAM: protein of unknown function DUF86; KEGG: rpc:RPC_0274 protein of unknown function DUF86.
 
  
 0.971
RPE_1848
PFAM: protein of unknown function DUF86; KEGG: rpc:RPC_1756 protein of unknown function DUF86.
 
  
 0.854
RPE_4868
PFAM: DNA polymerase, beta domain protein region; KEGG: rpd:RPD_1926 DNA polymerase, beta-like region.
  
     0.711
RPE_1849
PFAM: DNA polymerase, beta domain protein region; KEGG: rpc:RPC_1757 DNA polymerase, beta-like region.
  
     0.618
RPE_0399
PFAM: aminotransferase, class I and II; KEGG: rpc:RPC_0275 aminotransferase, class I and II.
       0.547
RPE_0398
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: rpc:RPC_0276 cell divisionFtsK/SpoIIIE.
       0.545
RPE_0402
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: rpa:RPA0275 putative ammonium transporter AmtB.
       0.511
RPE_2627
PFAM: protein of unknown function DUF433; KEGG: rpc:RPC_2499 protein of unknown function DUF433.
  
     0.451
RPE_0403
PFAM: nitrogen regulatory protein P-II; KEGG: rpd:RPD_0449 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
       0.441
RPE_4748
PFAM: protein of unknown function DUF433; KEGG: rpa:RPA0826 DUF433.
  
     0.404
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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