STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0411PFAM: histidine kinase, HAMP region domain protein; KEGG: rpc:RPC_0263 histidine kinase, HAMP region. (257 aa)    
Predicted Functional Partners:
RPE_1202
PFAM: response regulator receiver; Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein; KEGG: mag:amb2659 serine phosphatase RsbU.
   
 
 0.791
RPE_4371
KEGG: rpb:RPB_1632 hypothetical protein.
  
     0.772
RPE_2626
KEGG: rpd:RPD_2798 hypothetical protein.
 
   
 0.756
RPE_0832
KEGG: rpc:RPC_2959 putative outer membrane protein precursor.
  
     0.755
RPE_2625
KEGG: rpb:RPB_2754 neurotransmitter-gated ion-channel ligand-binding.
  
     0.754
RPE_4499
PFAM: protein of unknown function DUF1522; KEGG: rpa:RPA2297 hypothetical protein.
  
   
 0.754
RPE_3552
KEGG: rpc:RPC_3407 hypothetical protein.
  
     0.749
RPE_3330
KEGG: rpa:RPA2375 hypothetical protein.
  
     0.743
RPE_4872
Metallophosphoesterase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: metallophosphoesterase; KEGG: rpd:RPD_0905 twin-arginine translocation pathway signal.
  
     0.739
RPE_1839
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: rpc:RPC_1745 diguanylate cyclase (GGDEF domain).
   
 
 0.735
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.