STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0517PFAM: OmpA/MotB domain protein; KEGG: rpc:RPC_0065 OmpA/MotB. (628 aa)    
Predicted Functional Partners:
tolB
Transport system periplasmic component; Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
  
 
 0.803
RPE_1268
PFAM: BA14K family protein; KEGG: rpb:RPB_1022 BA14K-like.
  
     0.626
RPE_4705
KEGG: rpc:RPC_4749 hypothetical protein.
  
     0.601
RPE_1778
Transcriptional regulator, Crp/Fnr family; PFAM: cyclic nucleotide-binding; regulatory protein, Crp; KEGG: rpa:RPA0992 probable transcriptional regulator, Crp/Fnr family.
  
     0.593
rpsF
SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.
  
   0.562
RPE_2243
KEGG: rpc:RPC_3216 hypothetical protein.
  
    0.560
rpsB
PFAM: ribosomal protein S2; KEGG: rpc:RPC_2436 ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
  
 
 0.555
RPE_2991
Signal transduction histidine kinase; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein domain protein; histidine kinase, dimerisation/phosphoacceptor; KEGG: rpc:RPC_2872 signal transduction histidine kinase.
  
  
 0.552
RPE_0698
KEGG: rpc:RPC_0771 hypothetical protein.
  
 
   0.544
RPE_2344
KEGG: rpc:RPC_3116 hypothetical protein.
  
    0.529
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.