STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0622KEGG: bja:blr3214 nitric oxide reductase subunit C. (150 aa)    
Predicted Functional Partners:
RPE_0621
PFAM: cytochrome c oxidase, subunit I; KEGG: rpa:RPA1456 nitric-oxide reductase subunit B; Belongs to the heme-copper respiratory oxidase family.
 
 0.999
nosZ
Nitrous-oxide reductase; Nitrous-oxide reductase is part of a bacterial respiratory system which is activated under anaerobic conditions in the presence of nitrate or nitrous oxide; In the C-terminal section; belongs to the cytochrome c oxidase subunit 2 family.
 
 
 0.990
RPE_0618
PFAM: von Willebrand factor, type A; KEGG: rpa:RPA1458 dinitrification protein NorD.
 
  
 0.974
RPE_4071
Nitrite reductase, copper-containing; KEGG: bja:blr7089 respiratory nitrite reductase; TIGRFAM: nitrite reductase, copper-containing; PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3.
 
 
 0.968
RPE_0620
PFAM: ATPase associated with various cellular activities, AAA_5; CbbQ/NirQ/NorQ C-terminal domain protein; KEGG: rpa:RPA1457 regulatory protein NorQ, probable ATPase.
 
  
 0.966
RPE_0624
PFAM: cytochrome c oxidase, subunit III; KEGG: bja:blr3212 nitric oxide reductase subunit E.
 
 
 0.962
RPE_3094
PFAM: FMN-binding domain protein; KEGG: rpb:RPB_3141 FMN-binding.
 
  
 0.905
RPE_3076
KEGG: rpd:RPD_4256 hypothetical protein.
   
 
 0.850
RPE_0017
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; PFAM: cytochrome C oxidase, mono-heme subunit/FixO; KEGG: rpc:RPC_0014 cytochrome c oxidase, cbb3-type, subunit II.
  
 
 0.838
RPE_0018
TIGRFAM: cytochrome c oxidase, cbb3-type, subunit I; PFAM: cytochrome c oxidase, subunit I; KEGG: rpc:RPC_0015 cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
 
 0.836
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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