STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0697PFAM: major facilitator superfamily MFS_1; KEGG: rpd:RPD_0083 major facilitator superfamily MFS_1. (456 aa)    
Predicted Functional Partners:
RPE_0698
KEGG: rpc:RPC_0771 hypothetical protein.
       0.644
RPE_2693
Beta-N-acetylhexosaminidase; PFAM: glycoside hydrolase, family 3 domain protein; KEGG: rpb:RPB_2748 beta-N-acetylhexosaminidase.
 
   
 0.598
RPE_2179
HflC protein; HflC and HflK could regulate a protease.
  
   
 0.489
RPE_0701
TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_0775 lytic murein transglycosylase.
 
   
 0.463
RPE_2098
PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase, family 2; KEGG: rpc:RPC_2185 negative regulator of AmpC, AmpD.
 
   
 0.463
RPE_4177
PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; KEGG: rpc:RPC_4124 glutathione S-transferase-like; Belongs to the GST superfamily.
  
     0.429
RPE_2633
PFAM: Lytic transglycosylase, catalytic; KEGG: rpc:RPC_2890 lytic transglycosylase, catalytic.
  
   
 0.403
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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