STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0699PFAM: filamentation induced by cAMP protein Fic; KEGG: rpb:RPB_1983 filamentation induced by cAMP protein Fic. (191 aa)    
Predicted Functional Partners:
RPE_0700
Hypothetical protein.
       0.762
RPE_0701
TIGRFAM: lytic murein transglycosylase; PFAM: Peptidoglycan-binding domain 1 protein; KEGG: rpc:RPC_0775 lytic murein transglycosylase.
       0.642
RPE_4552
HAD-superfamily hydrolase, subfamily IIB; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.521
RPE_4736
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; 3-demethylubiquinone-9 3-methyltransferase; KEGG: rpc:RPC_4762 glyoxalase/bleomycin resistance protein/dioxygenase.
   
  
 0.489
RPE_0698
KEGG: rpc:RPC_0771 hypothetical protein.
       0.476
RPE_0702
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: rpc:RPC_0776 lysine exporter protein (LysE/YggA).
       0.455
RPE_3421
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: rpb:RPB_2380 transcriptional regulator, XRE family.
 
    0.414
RPE_3420
PFAM: aldo/keto reductase; KEGG: rpc:RPC_3339 2,5-didehydrogluconate reductase.
   
    0.410
RPE_4151
PFAM: aldo/keto reductase; KEGG: rpd:RPD_3895 aldo/keto reductase.
   
    0.410
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.