STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0717TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_0742 hypothetical protein. (263 aa)    
Predicted Functional Partners:
RPE_0716
PFAM: protein of unknown function DUF81; KEGG: rpc:RPC_0741 protein of unknown function DUF81.
 
     0.970
RPE_0213
PFAM: UspA domain protein; KEGG: rpc:RPC_0460 hypothetical protein.
 
     0.804
RPE_0131
KEGG: rpc:RPC_0541 hypothetical protein.
  
     0.584
RPE_0715
PFAM: Sel1 domain protein repeat-containing protein; KEGG: rpc:RPC_0738 Sel1.
       0.534
RPE_2142
KEGG: rpc:RPC_3273 hypothetical protein.
  
     0.528
RPE_1866
KEGG: rpc:RPC_1772 hypothetical protein.
  
     0.500
RPE_4708
Putative TolA; KEGG: rpc:RPC_4752 putative TolA.
  
     0.488
RPE_3412
KEGG: bja:bll5161 hypothetical protein.
  
     0.487
RPE_0823
Hpr(Ser) kinase/phosphatase; KEGG: rpc:RPC_0595 HPr kinase.
  
     0.460
RPE_0039
KEGG: rpc:RPC_0036 hypothetical protein.
  
     0.449
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.