STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0740KEGG: rpc:RPC_0720 hypothetical protein. (152 aa)    
Predicted Functional Partners:
RPE_2344
KEGG: rpc:RPC_3116 hypothetical protein.
  
     0.750
RPE_2784
KEGG: rpc:RPC_2604 hypothetical protein.
  
     0.743
RPE_4338
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4278 hypothetical protein.
  
     0.736
RPE_4423
KEGG: rpc:RPC_4360 hypothetical protein.
  
     0.732
RPE_4302
KEGG: rpc:RPC_4262 hypothetical protein.
  
     0.727
RPE_0876
KEGG: rpa:RPA1154 hypothetical protein.
  
     0.723
RPE_1931
KEGG: rpc:RPC_1833 hypothetical protein.
  
     0.715
RPE_2076
KEGG: rpc:RPC_2169 hypothetical protein.
  
     0.715
RPE_2198
PFAM: sulfatase; KEGG: rpc:RPC_3246 sulfatase.
  
     0.715
RPE_0322
PFAM: transcription activator, effector binding; KEGG: rpc:RPC_0216 transcription activator, effector binding.
  
     0.704
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.