STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0744Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpb:RPB_0879 transcriptional regulator, LysR family. (300 aa)    
Predicted Functional Partners:
RPE_0746
PFAM: amidohydrolase 2; KEGG: rpb:RPB_0877 amidohydrolase 2.
 
     0.661
RPE_2870
Transcriptional regulator, LysR family; PFAM: regulatory protein, LysR; LysR, substrate-binding; KEGG: rpa:RPA0809 transcriptional regulator, LysR family.
  
     0.657
RPE_0749
PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2.
 
     0.611
RPE_0747
PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase.
 
     0.577
RPE_0752
PFAM: oxidoreductase domain protein; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase.
 
   
 0.571
RPE_0748
KEGG: rpa:RPA4699 possible dehydrogenase.
 
   
 0.553
RPE_0743
KEGG: nha:Nham_0216 hypothetical protein.
       0.485
RPE_0683
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: rpc:RPC_0761 glutamate synthase (ferredoxin).
  
  
 0.467
RPE_0751
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rpa:RPA4702 protocatechuate 4,5-dioxygenase, beta chain.
 
     0.463
RPE_0750
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rpd:RPD_0983 protocatechuate 4,5-dioxygenase.
 
     0.449
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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