STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0747PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase. (231 aa)    
Predicted Functional Partners:
RPE_0746
PFAM: amidohydrolase 2; KEGG: rpb:RPB_0877 amidohydrolase 2.
 
  
 0.996
RPE_0745
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
 
   
 0.961
RPE_0748
KEGG: rpa:RPA4699 possible dehydrogenase.
 
     0.952
RPE_0749
PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2.
 
   
 0.908
RPE_1801
Acetolactate synthase, large subunit; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpd:RPD_3594 thiamine pyrophosphate enzyme-like TPP-binding; Belongs to the TPP enzyme family.
     
  0.900
RPE_2004
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpd:RPD_2070 thiamine pyrophosphate enzyme-like TPP-binding.
     
  0.900
RPE_2187
TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpa:RPA2031 acetolactate synthase (large subunit).
     
  0.900
RPE_2189
TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: rpc:RPC_3253 acetolactate synthase, small subunit.
     
  0.900
RPE_4300
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: rpc:RPC_4260 thiamine pyrophosphate enzyme-like TPP-binding.
     
  0.900
RPE_0751
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rpa:RPA4702 protocatechuate 4,5-dioxygenase, beta chain.
 
   
 0.881
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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