STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0752PFAM: oxidoreductase domain protein; KEGG: rpa:RPA4703 4-carboxy-2-hydroxymuconate-6-semialdehyde dehydrogenase. (318 aa)    
Predicted Functional Partners:
RPE_0750
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase LigAB, LigA subunit; KEGG: rpd:RPD_0983 protocatechuate 4,5-dioxygenase.
 
  
 0.996
RPE_0751
Protocatechuate 4,5-dioxygenase; PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; KEGG: rpa:RPA4702 protocatechuate 4,5-dioxygenase, beta chain.
 
  
 0.996
RPE_0749
PFAM: amidohydrolase 2; KEGG: rpb:RPB_0874 amidohydrolase 2.
 
  
 0.989
RPE_0746
PFAM: amidohydrolase 2; KEGG: rpb:RPB_0877 amidohydrolase 2.
 
  
 0.877
RPE_0747
PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpb:RPB_0876 dimethylmenaquinone methyltransferase.
 
   
 0.868
RPE_0748
KEGG: rpa:RPA4699 possible dehydrogenase.
 
     0.807
RPE_1516
dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rpa:RPA3925 putative dTDP-glucose 4,6-dehydratase.
  
  
 0.752
RPE_0745
Methylitaconate delta2-delta3-isomerase; PFAM: protein of unknown function DUF453; KEGG: rpb:RPB_0878 protein of unknown function DUF453.
 
   
 0.705
RPE_1456
PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: rpd:RPD_1620 DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.648
RPE_1521
PFAM: aminotransferase, class V; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mag:amb0075 predicted pyridoxal phosphate-dependent enzyme; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.643
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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