STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0768PFAM: Collagen triple helix repeat; KEGG: rpb:RPB_1937 collagen triple helix repeat. (216 aa)    
Predicted Functional Partners:
RPE_3149
TIGRFAM: TonB-dependent hemoglobin/transferrin/lactoferrin family receptor; TonB-dependent heme/hemoglobin receptor family protein; PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_1973 TonB-dependent haem/haemoglobin receptor.
    
 
 0.785
RPE_2784
KEGG: rpc:RPC_2604 hypothetical protein.
  
 
 
 0.703
RPE_2394
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.
  
 
 0.679
RPE_0398
PFAM: cell divisionFtsK/SpoIIIE; SMART: AAA ATPase; KEGG: rpc:RPC_0276 cell divisionFtsK/SpoIIIE.
    
 
 0.650
RPE_3849
SMART: AAA ATPase; KEGG: mlo:mll1902 hypothetical protein.
    
 
 0.650
RPE_0271
C-terminal processing peptidase-3. Serine peptidase. MEROPS family S41A; KEGG: rpd:RPD_0566 carboxyl-terminal protease; TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; Belongs to the peptidase S41A family.
  
   0.600
RPE_1573
KEGG: rpb:RPB_3761 hypothetical protein.
    
 
 0.590
RPE_4642
PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; KEGG: sil:SPOA0205 serine protease, subtilase family.
  
 
 0.590
RPE_2625
KEGG: rpb:RPB_2754 neurotransmitter-gated ion-channel ligand-binding.
  
     0.553
RPE_1914
TIGRFAM: phiE125 gp8 family; KEGG: rpc:RPC_1813 phage conserved hypothetical protein, phiE125 gp8.
  
 
 0.525
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.