STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0787KEGG: rpc:RPC_0625 hypothetical protein. (172 aa)    
Predicted Functional Partners:
RPE_0788
PFAM: LrgA family protein; KEGG: rpc:RPC_0624 LrgA.
       0.726
RPE_0789
PFAM: LrgB family protein; KEGG: rpa:RPA0545 hypothetical protein.
       0.726
RPE_4835
KEGG: rpc:RPC_4870 hypothetical protein.
  
    0.703
RPE_2275
PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpc:RPC_3182 peptidase C14, caspase catalytic subunit P20.
  
    0.656
RPE_2900
KEGG: rpb:RPB_2725 hypothetical protein.
 
     0.622
RPE_2394
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; KEGG: rpb:RPB_3437 outer membrane autotransporter.
  
  
 0.613
RPE_2095
PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; KEGG: rpc:RPC_4299 TonB-dependent receptor.
  
 
 
 0.553
tal
Glucose-6-phosphate isomerase / transaldolase; Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway; Belongs to the GPI family.
 
     0.530
RPE_1921
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_1821 hypothetical protein.
   
   0.522
RPE_1922
Hypothetical protein; KEGG: rpd:RPD_1991 phage conserved hypothetical protein BR0599.
   
   0.522
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.