STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0789PFAM: LrgB family protein; KEGG: rpa:RPA0545 hypothetical protein. (240 aa)    
Predicted Functional Partners:
RPE_0788
PFAM: LrgA family protein; KEGG: rpc:RPC_0624 LrgA.
 
  
 0.997
RPE_0787
KEGG: rpc:RPC_0625 hypothetical protein.
       0.726
RPE_0790
Conserved hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: DSBA oxidoreductase; KEGG: rpc:RPC_0622 twin-arginine translocation pathway signal.
       0.552
RPE_2671
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bur:Bcep18194_B1067 TPR repeat protein.
  
    0.508
RPE_0786
PFAM: Disulphide bond formation protein DsbB; KEGG: rpc:RPC_0627 disulphide bond formation protein DsbB.
       0.452
RPE_1449
TIGRFAM: lipopolysaccharide heptosyltransferase I; PFAM: glycosyl transferase, family 9; KEGG: rpc:RPC_1428 lipopolysaccharide heptosyltransferase I.
   
    0.443
RPE_1451
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase, family 9; KEGG: rpc:RPC_1430 lipopolysaccharide heptosyltransferase II.
   
    0.443
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.