STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0799PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: rpc:RPC_0613 HNH endonuclease. (185 aa)    
Predicted Functional Partners:
RPE_4026
PFAM: TRAG family protein; KEGG: rpc:RPC_3903 TraG protein.
   
 
 0.851
RPE_0798
KEGG: rru:Rru_A1257 hypothetical protein.
       0.645
RPE_1428
KEGG: rpc:RPC_1407 hypothetical protein.
  
    0.567
glgA
Glycogen/starch synthases, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
       0.481
glgC
Glucose-1-phosphate adenylyltransferase; Involved in the biosynthesis of ADP-glucose, a building block required for the elongation reactions to produce glycogen. Catalyzes the reaction between ATP and alpha-D-glucose 1-phosphate (G1P) to produce pyrophosphate and ADP-Glc; Belongs to the bacterial/plant glucose-1-phosphate adenylyltransferase family.
       0.481
RPE_4431
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rpc:RPC_4366 DNA methylase N-4/N-6; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.459
RPE_2695
Condensin subunit ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
 
    0.447
RPE_1895
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: rpc:RPC_1801 phage portal protein, HK97.
  
  
 0.441
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.431
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.