STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0807PFAM: lipopolysaccharide biosynthesis; KEGG: rru:Rru_A1490 protein-tyrosine kinase. (748 aa)    
Predicted Functional Partners:
RPE_2842
PFAM: sugar transferase; KEGG: rpd:RPD_2694 sugar transferase.
 
  
 0.989
RPE_2844
PFAM: polysaccharide export protein; KEGG: rpc:RPC_4940 polysaccharide export protein.
 
 
 0.982
RPE_3496
PFAM: polysaccharide export protein; KEGG: sme:SMb21073 putative OMA family outer membrane saccharide export protein, similar to ExoF.
 
 
 0.982
RPE_4917
PFAM: polysaccharide export protein; KEGG: rpc:RPC_4940 polysaccharide export protein.
 
 
 0.982
RPE_1091
PFAM: polysaccharide export protein; KEGG: gme:Gmet_1444 polysaccharide export protein.
 
 
 0.965
RPE_1093
PFAM: sugar transferase; KEGG: bja:blr2358 probable glycosyl transferase.
 
  
 0.941
RPE_3504
Undecaprenyl-phosphate galactose phosphotransferase; PFAM: sugar transferase; KEGG: ret:RHE_CH01359 putative sugar transferase involved in lipopolysaccharide synthesis, UDP-galactose-lipid carriertransferase protein.
 
  
 0.933
RPE_0808
PFAM: glycosyl transferase, group 1; KEGG: ana:alr3699 similar to glycosyltransferase.
 
  
 0.859
RPE_3498
PFAM: lipopolysaccharide biosynthesis; KEGG: ccr:CC0164 hypothetical protein.
 
  
 0.846
RPE_4218
Polysaccharide biosynthesis protein CapD; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; KEGG: rpc:RPC_4163 polysaccharide biosynthesis protein CapD.
 
  
 0.839
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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