STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0809PFAM: polysaccharide deacetylase; KEGG: bja:bll1083 hypothetical protein. (340 aa)    
Predicted Functional Partners:
RPE_0810
PFAM: glycosyl transferase, group 1; KEGG: ava:Ava_1365 glycosyl transferase, group 1.
  
  
 0.782
RPE_4510
KEGG: rpc:RPC_4438 hypothetical protein.
 
   
 0.766
RPE_0807
PFAM: lipopolysaccharide biosynthesis; KEGG: rru:Rru_A1490 protein-tyrosine kinase.
 
   
 0.745
RPE_2843
PFAM: glycosyl transferase, group 1; KEGG: rpc:RPC_2683 glycosyl transferase, group 1.
 
  
 0.744
RPE_2845
PFAM: lipopolysaccharide biosynthesis; KEGG: rpc:RPC_2684 lipopolysaccharide biosynthesis.
 
   
 0.737
RPE_1843
Hypothetical protein; TIGRFAM: Twin-arginine translocation pathway signal; KEGG: rpc:RPC_1748 twin-arginine translocation pathway signal.
  
     0.678
RPE_4125
PFAM: multi antimicrobial extrusion protein MatE; polysaccharide biosynthesis protein; KEGG: rpc:RPC_4001 polysaccharide biosynthesis protein.
 
   
 0.678
RPE_2326
PFAM: type IV pilus assembly PilZ; KEGG: rpc:RPC_3133 type IV pilus assembly PilZ.
  
     0.673
RPE_1896
PFAM: type IV pilus assembly PilZ; KEGG: rpc:RPC_1802 type IV pilus assembly PilZ.
  
     0.652
RPE_3592
KEGG: rpc:RPC_3454 hypothetical protein.
 
     0.639
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.