STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0848PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA2193 putative ABC transporter, perplasmic binding protein, branched chain amino acids. (405 aa)    
Predicted Functional Partners:
RPE_3051
PFAM: inner-membrane translocator; KEGG: rpd:RPD_2332 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.851
RPE_3055
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA2275 putative branched-chain amino acid transport system ATP-binding protein.
 
    0.846
RPE_3052
PFAM: inner-membrane translocator; KEGG: rpc:RPC_2952 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.839
RPE_3054
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_2954 ABC transporter related.
 
    0.819
RPE_0595
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1019 ABC transporter related; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.793
RPE_3208
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: bja:bll3424 ABC transporter ATP-binding/permease protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.746
RPE_3796
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3572 branched-chain amino acid transport system ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
  
  
 0.746
RPE_0847
PFAM: AMP-dependent synthetase and ligase; KEGG: bja:bll7864 acyl-CoA synthase.
       0.610
RPE_4223
PFAM: inner-membrane translocator; KEGG: rpd:RPD_1578 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
 
    0.527
RPE_4212
PFAM: inner-membrane translocator; KEGG: bja:bll5951 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
    0.472
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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