STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0865KEGG: rpc:RPC_4723 hypothetical protein. (262 aa)    
Predicted Functional Partners:
RPE_3926
CheA signal transduction histidine kinases; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_3803 CheA signal transduction histidine kinases.
 
 
 0.995
RPE_4284
CheA signal transduction histidine kinases; PFAM: response regulator receiver; CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4247 CheA signal transduction histidine kinases.
 
 
 0.995
RPE_0920
PFAM: response regulator receiver; KEGG: rpc:RPC_0897 response regulator receiver domain protein (CheY-like).
 
 0.977
RPE_4282
PFAM: response regulator receiver; KEGG: rpc:RPC_4245 response regulator receiver domain protein (CheY-like).
 
 0.975
RPE_1193
CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: ccr:CC0433 chemotaxis protein CheA.
  
 
 0.951
RPE_3631
CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4607 CheA signal transduction histidine kinases.
  
 
 0.951
RPE_4675
CheA signal transduction histidine kinases; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; KEGG: rpc:RPC_4676 CheA signal transduction histidine kinases.
  
 
 0.951
RPE_3632
PFAM: response regulator receiver; KEGG: rpc:RPC_4608 response regulator receiver domain protein (CheY-like).
  
 0.950
RPE_4676
PFAM: response regulator receiver; KEGG: rpc:RPC_4677 response regulator receiver domain protein (CheY-like).
  
 0.950
RPE_1192
PFAM: response regulator receiver; KEGG: gme:Gmet_2428 response regulator receiver domain protein (CheY-like).
  
 
 0.909
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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