STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0868KEGG: rpc:RPC_4721 putative periplasmic ligand-binding sensor protein. (276 aa)    
Predicted Functional Partners:
RPE_0869
PFAM: YdjC family protein; KEGG: rpd:RPD_4120 YdjC-like protein.
 
     0.761
RPE_4823
KEGG: rpc:RPC_4859 hypothetical protein.
  
     0.691
RPE_4593
KEGG: rpc:RPC_1137 hypothetical protein.
  
     0.667
RPE_2973
KEGG: rpc:RPC_2847 hypothetical protein.
  
     0.661
RPE_4879
KEGG: rpc:RPC_4911 hypothetical protein.
  
     0.589
RPE_2311
KEGG: rpc:RPC_3145 hypothetical protein.
  
     0.558
RPE_0288
KEGG: rpa:RPA0183 hypothetical protein.
  
     0.546
RPE_0870
PFAM: glycosyl transferase, family 2; KEGG: rpc:RPC_4719 glycosyl transferase, family 2.
       0.543
RPE_2076
KEGG: rpc:RPC_2169 hypothetical protein.
  
     0.530
RPE_0685
PFAM: heat shock protein Hsp20; KEGG: rpb:RPB_4533 heat shock protein HSP20; Belongs to the small heat shock protein (HSP20) family.
  
    0.528
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.