STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0876KEGG: rpa:RPA1154 hypothetical protein. (174 aa)    
Predicted Functional Partners:
RPE_3446
KEGG: rpa:RPA3183 hypothetical protein.
  
     0.761
RPE_1431
KEGG: rpc:RPC_1410 hypothetical protein.
  
     0.759
RPE_4140
KEGG: rpc:RPC_4085 hypothetical protein.
  
     0.745
RPE_2784
KEGG: rpc:RPC_2604 hypothetical protein.
  
     0.738
RPE_3316
KEGG: rpd:RPD_2989 hypothetical protein.
  
     0.733
RPE_4302
KEGG: rpc:RPC_4262 hypothetical protein.
  
     0.730
RPE_4063
KEGG: rpc:RPC_3942 PAS/PAC sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein domain protein; histidine kinase A domain protein domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
     0.724
RPE_0740
KEGG: rpc:RPC_0720 hypothetical protein.
  
     0.723
RPE_3463
KEGG: rpb:RPB_2223 hypothetical protein.
  
     0.717
RPE_4423
KEGG: rpc:RPC_4360 hypothetical protein.
  
     0.714
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.