STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0895PFAM: cytochrome P450; KEGG: rpc:RPC_4693 cytochrome P450. (458 aa)    
Predicted Functional Partners:
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
    
 0.825
RPE_1476
PFAM: ferredoxin; KEGG: rpc:RPC_1457 ferredoxin.
 
 0.776
RPE_1938
PFAM: ferredoxin; KEGG: rpc:RPC_1840 ferredoxin.
  
 0.748
rplF
LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.734
RPE_2725
PFAM: phosphoesterase, PA-phosphatase related; KEGG: rpc:RPC_2545 phosphoesterase, PA-phosphatase related.
   
 0.676
RPE_2215
PFAM: glycosyl transferase, family 28; KEGG: sth:STH2411 UDP-glucose:sterol glucosyltransferase.
  
 
 0.648
RPE_0581
KEGG: sme:SMb20651 hypothetical protein.
  
 0.583
RPE_2023
PFAM: phosphopantetheine-binding; KEGG: rpc:RPC_2111 phosphopantetheine-binding.
  
 0.583
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 0.583
RPE_1684
PFAM: PGAP1 family protein; KEGG: rpd:RPD_1818 hypothetical protein.
 
 
 0.559
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.