STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0900PFAM: peptidase C14, caspase catalytic subunit p20; KEGG: rpc:RPC_4686 peptidase C14, caspase catalytic subunit P20. (289 aa)    
Predicted Functional Partners:
RPE_1276
KEGG: rpc:RPC_1229 hypothetical protein.
  
     0.511
RPE_3826
PFAM: regulatory protein, TetR; KEGG: rpc:RPC_2195 transcriptional regulator, TetR family.
  
     0.476
RPE_3316
KEGG: rpd:RPD_2989 hypothetical protein.
  
     0.475
RPE_2784
KEGG: rpc:RPC_2604 hypothetical protein.
  
     0.461
RPE_4715
KEGG: bja:bll7164 hypothetical protein.
 
     0.448
RPE_0076
Hypothetical protein; KEGG: bur:Bcep18194_B0441 outer membrane protein, haemagluttinin-like.
  
     0.429
RPE_4072
PFAM: protein of unknown function DUF323; KEGG: bja:blr7090 probable periplasmic nitrate reductase.
 
     0.423
RPE_4302
KEGG: rpc:RPC_4262 hypothetical protein.
  
     0.423
RPE_1634
PFAM: Cupin 2, conserved barrel domain protein; KEGG: rpc:RPC_1605 cupin 2, conserved barrel.
  
     0.410
RPE_0899
KEGG: rpc:RPC_4687 hypothetical protein.
       0.406
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.