STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0906KEGG: rpc:RPC_0886 secretion protein HlyD. (297 aa)    
Predicted Functional Partners:
RPE_0905
PFAM: acriflavin resistance protein; KEGG: rpc:RPC_0885 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.977
RPE_3987
PFAM: acriflavin resistance protein; KEGG: rpc:RPC_3023 acriflavin resistance protein; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.805
RPE_4658
TIGRFAM: heavy metal efflux pump, CzcA family; PFAM: acriflavin resistance protein; KEGG: rpc:RPC_4657 heavy metal efflux pump CzcA; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.723
RPE_0904
PFAM: AsmA family protein; KEGG: rpd:RPD_1004 AsmA.
       0.668
RPE_2748
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: rpc:RPC_2568 type I secretion outer membrane protein, TolC.
 
 
 0.631
RPE_0903
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: rpc:RPC_4685 secretion protein HlyD; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
    
0.623
RPE_0907
PFAM: OmpA/MotB domain protein; KEGG: rpb:RPB_0896 OmpA/MotB.
 
 
 
 0.585
RPE_1276
KEGG: rpc:RPC_1229 hypothetical protein.
 
     0.578
RPE_0908
PFAM: TPR repeat-containing protein; peptidase C14, caspase catalytic subunit p20; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: rpb:RPB_0897 peptidase C14, caspase catalytic subunit P20.
 
 
   0.558
lolD-2
ABC transporter related; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 
 0.530
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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