STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0910KEGG: rpb:RPB_0904 hypothetical protein. (75 aa)    
Predicted Functional Partners:
RPE_0911
PFAM: beta-lactamase domain protein; KEGG: rpa:RPA4673 putative beta lactamase precursor.
 
     0.887
RPE_0909
PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; KEGG: rpc:RPC_0888 monooxygenase, FAD-binding.
 
    0.841
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
 
     0.683
RPE_3800
PFAM: Extracellular ligand-binding receptor; KEGG: bja:blr7848 probable substrate-binding protein.
  
     0.493
RPE_0913
Fumarylacetoacetate hydrolase; KEGG: rpb:RPB_0909 fumarylacetoacetase; TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase.
 
     0.477
RPE_3801
PFAM: thioesterase superfamily protein; KEGG: rpd:RPD_1888 thioesterase superfamily.
  
     0.435
RPE_3796
ABC transporter related; PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; KEGG: rpb:RPB_3572 branched-chain amino acid transport system ATP-binding protein; Belongs to the binding-protein-dependent transport system permease family.
  
     0.434
RPE_0546
Extracellular ligand-binding receptor; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: Extracellular ligand-binding receptor; KEGG: rpd:RPD_4371 twin-arginine translocation pathway signal.
  
     0.404
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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