STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0934PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: rpc:RPC_0910 L-carnitine dehydratase/bile acid-inducible protein F; Belongs to the CoA-transferase III family. (376 aa)    
Predicted Functional Partners:
RPE_3212
PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: eba:ebA2066 putative CoA-transferase protein, (family III); Belongs to the CoA-transferase III family.
  
     0.769
RPE_0935
PFAM: 4-oxalocrotonate tautomerase; KEGG: rpd:RPD_1290 4-oxalocrotonate tautomerase.
       0.674
RPE_0119
PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; KEGG: rpd:RPD_0270 acyl-CoA dehydrogenase-like.
 
 
 0.549
RPE_3528
PFAM: MaoC domain protein dehydratase; KEGG: rpb:RPB_2352 MaoC-like dehydratase.
 
 
 0.482
RPE_3526
PFAM: NUDIX hydrolase; KEGG: rpd:RPD_3111 NUDIX hydrolase.
  
    0.448
RPE_0532
PFAM: acyl-CoA dehydrogenase domain protein; KEGG: rpb:RPB_4675 acyl-CoA dehydrogenase-like.
 
 
 0.440
RPE_0936
Thioesterase superfamily; KEGG: bja:bll7455 hypothetical protein.
     
 0.425
RPE_2390
PFAM: short-chain dehydrogenase/reductase SDR; glucose/ribitol dehydrogenase; KEGG: rpc:RPC_3088 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
 
 0.410
RPE_4355
PFAM: beta-lactamase domain protein; KEGG: rpc:RPC_4296 beta-lactamase-like.
  
    0.400
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.