STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0940PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; KEGG: rpc:RPC_0916 ATPase associated with various cellular activities, AAA_3. (333 aa)    
Predicted Functional Partners:
RPE_0939
DUF58; KEGG: rpc:RPC_0915 DUF58.
  
 0.988
RPE_0938
TIGRFAM: conserved hypothetical membrane protein; KEGG: rpc:RPC_0914 double-transmembrane region-like.
 
     0.949
RPE_0937
KEGG: rpc:RPC_0912 hypothetical protein.
 
     0.836
RPE_3166
PFAM: Orn/Lys/Arg decarboxylase, major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: rpa:RPA2051 putative ornithine decarboxylase.
   
 
 0.724
RPE_0941
PFAM: protein of unknown function DUF1285; KEGG: rpb:RPB_1193 protein of unknown function DUF1285.
 
     0.609
RPE_4838
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4872 hypothetical protein.
  
 
   0.568
RPE_0943
KEGG: rpc:RPC_0919 hypothetical protein.
       0.565
RPE_3134
KEGG: rpc:RPC_1912 hypothetical protein.
 
  
 0.564
RPE_0944
PFAM: Polynucleotide adenylyltransferase region; KEGG: rpc:RPC_0920 polynucleotide adenylyltransferase region; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
  
    0.551
RPE_0942
PFAM: NUDIX hydrolase; KEGG: rpc:RPC_0918 NUDIX hydrolase.
       0.547
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.