STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0954KEGG: rpc:RPC_0931 hypothetical protein. (220 aa)    
Predicted Functional Partners:
RPE_0956
PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH dehydrogenase (ubiquinone), 30 kDa subunit; KEGG: rpc:RPC_0933 NADH-ubiquinone oxidoreductase, chain 49kDa.
 
  
 0.997
RPE_0957
PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; KEGG: bja:blr6344 probable hydrogenase-3 subunit G.
 
  
 0.988
RPE_0953
KEGG: rpc:RPC_0930 respiratory-chain NADH dehydrogenase, subunit 1.
 
  
 0.986
RPE_0952
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpc:RPC_0929 NADH dehydrogenase (quinone).
 
  
 0.981
RPE_0955
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpc:RPC_0932 NADH dehydrogenase (quinone).
 
  
 0.981
RPE_3871
NADH dehydrogenase (quinone); PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: rpc:RPC_3855 NADH dehydrogenase (quinone).
  
  
 0.527
RPE_0958
TIGRFAM: outer membrane autotransporter barrel domain; PFAM: Autotransporter beta- domain protein; KEGG: rpd:RPD_3849 outer membrane autotransporter barrel.
       0.526
RPE_0887
PFAM: SbmABacA family protein; ABC transporter domain protein; KEGG: rpc:RPC_4701 ABC transporter-like.
  
     0.401
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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