STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0963KEGG: bja:bll7951 hypothetical protein. (50 aa)    
Predicted Functional Partners:
RPE_3201
PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; KEGG: sme:SMb21530 acetolactate synthase large subunit.
  
     0.607
RPE_0960
PFAM: MotA/TolQ/ExbB proton channel; KEGG: rpc:RPC_0936 MotA/TolQ/ExbB proton channel.
       0.432
RPE_0961
PFAM: Biopolymer transport protein ExbD/TolR; KEGG: rpc:RPC_0937 biopolymer transport protein ExbD/TolR.
       0.432
RPE_0962
TIGRFAM: TonB family protein; KEGG: rpc:RPC_0938 TonB-like.
       0.432
RPE_0964
PFAM: protein of unknown function DUF1153; KEGG: nha:Nham_0692 protein of unknown function DUF1153.
       0.431
RPE_2360
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: bja:blr5512 hypothetical protein.
  
     0.415
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.