STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0964PFAM: protein of unknown function DUF1153; KEGG: nha:Nham_0692 protein of unknown function DUF1153. (91 aa)    
Predicted Functional Partners:
RPE_1526
PFAM: flagellar FlbT family protein; KEGG: rpc:RPC_1491 flagellar FlbT.
   
    0.869
RPE_4498
KEGG: rpd:RPD_2371 hypothetical protein.
   
    0.869
RPE_1527
PFAM: flagellar FlaF family protein; KEGG: rpa:RPA3913 putative flagellar protein FlaF.
   
    0.864
RPE_0966
Flagellar motor switch protein FliG; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
    0.851
RPE_1176
PFAM: flagellar FlbT family protein; KEGG: rpc:RPC_1115 flagellar FlbT.
   
    0.847
RPE_1175
PFAM: flagellar FlaF family protein; KEGG: rpc:RPC_1114 flagellar FlaF.
   
    0.799
RPE_3904
Putative anti-sigma regulatory factor, serine/threonine protein kinase; KEGG: pfo:Pfl_2556 GCN5-related N-acetyltransferase.
   
    0.799
RPE_3911
Putative anti-sigma regulatory factor, serine/threonine protein kinase; PFAM: ATP-binding region, ATPase domain protein domain protein; KEGG: sat:SYN_02357 anti-sigma regulatory factor.
   
    0.799
RPE_3406
KEGG: nwi:Nwi_1697 hypothetical protein.
  
    0.757
RPE_4285
KEGG: rpc:RPC_4248 hypothetical protein.
  
    0.746
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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