STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0973KEGG: rpa:RPA1271 hypothetical protein. (87 aa)    
Predicted Functional Partners:
RPE_0972
Hypothetical protein.
       0.603
RPE_0974
PFAM: transglutaminase domain protein; KEGG: rpc:RPC_0949 transglutaminase-like.
 
     0.537
RPE_1764
KEGG: rpc:RPC_4014 hypothetical protein.
  
     0.444
RPE_2309
KEGG: rpc:RPC_3147 hypothetical protein.
  
     0.434
RPE_0971
KEGG: rpc:RPC_0947 hypothetical protein.
       0.425
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.