STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0981phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (447 aa)    
Predicted Functional Partners:
RPE_0997
TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_0682 phenylacetic acid degradation protein PaaD.
 
 
 0.962
RPE_3907
Coenzyme F390 synthetase-like protein; KEGG: cvi:CV4319 hypothetical protein.
  
  
 
0.929
RPE_3181
KEGG: rpd:RPD_3222 phenylacetate--CoA ligase.
  
  
 
0.912
RPE_0996
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
  
  
 
0.903
RPE_3704
PFAM: Amidase; KEGG: rpc:RPC_3666 amidase; Belongs to the amidase family.
    
  0.902
RPE_3908
KEGG: gvi:gll2007 putative phenylacetate-CoA ligase.
     
  0.900
RPE_0986
Thiamine pyrophosphate enzyme domain protein TPP-binding protein; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
    0.871
RPE_0988
TIGRFAM: phenylacetate-CoA oxygenase, PaaG subunit; PFAM: phenylacetic acid catabolic family protein; KEGG: rpc:RPC_0691 phenylacetate-CoA oxygenase, PaaG subunit.
 
 
 0.857
RPE_0985
Indolepyruvate ferredoxin oxidoreductase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; KEGG: rpc:RPC_0694 pyruvate ferredoxin/flavodoxin oxidoreductase.
 
    0.822
RPE_0989
TIGRFAM: phenylacetate-CoA oxygenase, PaaH subunit; PFAM: phenylacetic acid degradation B; KEGG: rpd:RPD_1825 phenylacetic acid degradation B.
 
 
 0.816
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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