STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_0993PFAM: Ethyl tert-butyl ether degradation EthD; KEGG: rpc:RPC_0686 ethyl tert-butyl ether degradation EthD. (103 aa)    
Predicted Functional Partners:
RPE_0994
TIGRFAM: phenylacetic acid degradation protein paaN; PFAM: aldehyde dehydrogenase; MaoC domain protein dehydratase; KEGG: rpc:RPC_0685 phenylacetic acid degradation protein PaaN.
       0.639
gfa
Glutathione-dependent formaldehyde-activating, GFA; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family.
  
     0.610
RPE_0995
PFAM: regulatory protein, TetR; KEGG: rpc:RPC_0684 transcriptional regulator, TetR family.
       0.497
RPE_0997
TIGRFAM: uncharacterized domain 1; phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: rpc:RPC_0682 phenylacetic acid degradation protein PaaD.
       0.477
RPE_0998
Enoyl-CoA hydratase; TIGRFAM: phenylacetate degradation probable enoyl-CoA hydratase paaB; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: rpc:RPC_0681 enoyl-CoA hydratase PaaB; Belongs to the enoyl-CoA hydratase/isomerase family.
       0.475
RPE_0259
PFAM: OsmC family protein; KEGG: bja:blr0920 hypothetical protein.
  
     0.466
RPE_1701
KEGG: rpd:RPD_1858 putative acetyl-CoA acetyltransferase.
  
     0.464
RPE_2464
KEGG: gvi:gll4095 hypothetical protein.
  
     0.461
RPE_0996
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
       0.454
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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