STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1001PFAM: inner-membrane translocator; KEGG: rpa:RPA4021 putative branched-chain amino acid ABC transport system permease protein livm (liv-I protein m). (314 aa)    
Predicted Functional Partners:
RPE_1000
PFAM: inner-membrane translocator; KEGG: rpa:RPA4020 possible branched-chain amino acid transport system permease protein.
 
 0.998
RPE_1002
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpa:RPA4022 putative branched-chain amino acid ABC transport system, ATP-binding protein.
  
 0.989
RPE_1003
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_0676 ABC transporter related.
  
 0.981
RPE_0594
PFAM: inner-membrane translocator; KEGG: rpa:RPA0667 putative membrane spanning subunit of ABC transporter; Belongs to the binding-protein-dependent transport system permease family.
  
 0.943
RPE_0999
PFAM: Extracellular ligand-binding receptor; KEGG: rpa:RPA4019 putative branched-chain amino acid ABC transporter system substrate-binding protein.
 
  
 0.938
RPE_3052
PFAM: inner-membrane translocator; KEGG: rpc:RPC_2952 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.920
RPE_3782
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bja:blr7823 ABC transporter ATP-binding protein.
  
 0.917
RPE_1649
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rpc:RPC_1620 ABC transporter related.
  
 0.915
RPE_3784
PFAM: inner-membrane translocator; KEGG: rpd:RPD_3557 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.898
RPE_4229
PFAM: inner-membrane translocator; KEGG: rpd:RPD_1568 inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family.
  
 0.890
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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