STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1061PFAM: protein of unknown function DUF1194; KEGG: rpc:RPC_1144 protein of unknown function DUF1194. (285 aa)    
Predicted Functional Partners:
RPE_1661
Molybdenum cofactor cytidylyltransferase / molybdopterin molybdochelatase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; molybdopterin binding domain; KEGG: rpc:RPC_1637 4-diphosphocytidyl-2C-methyl-D-erythritol synthase.
  
     0.633
RPE_4858
KEGG: rpb:RPB_0080 hypothetical protein.
  
    0.598
RPE_4415
KEGG: rpd:RPD_1215 hypothetical protein.
  
     0.587
clpS
ATP-dependent Clp protease adaptor protein ClpS; Involved in the modulation of the specificity of the ClpAP- mediated ATP-dependent protein degradation; Belongs to the ClpS family.
       0.581
RPE_3396
PFAM: branched-chain amino acid transport; KEGG: rpc:RPC_3318 hypothetical protein.
  
     0.581
RPE_2600
KEGG: rpc:RPC_2476 hypothetical protein.
  
     0.575
RPE_4061
Phasin; TIGRFAM: phasin family protein; phasin; KEGG: rpc:RPC_3940 phasin 2.
  
     0.553
RPE_0694
KEGG: rpd:RPD_0866 hypothetical protein.
  
     0.538
RPE_4838
TIGRFAM: conserved hypothetical protein; KEGG: rpc:RPC_4872 hypothetical protein.
  
     0.525
RPE_3397
PFAM: AzlC family protein; KEGG: rpc:RPC_3319 AzlC-like.
  
     0.509
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.