STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RPE_1069PFAM: histone deacetylase superfamily; KEGG: rpc:RPC_1151 histone deacetylase superfamily. (309 aa)    
Predicted Functional Partners:
RPE_2469
PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: rme:Rmet_2342 AAA ATPase, central region.
 
 
 0.898
RPE_1578
PFAM: nuclear protein SET; KEGG: rpc:RPC_1538 nuclear protein SET.
 
 0.894
cobB-2
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class U subfamily.
    
 0.883
RPE_1363
PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; KEGG: rpc:RPC_1329 AAA ATPase, central region.
   
 0.871
RPE_1847
KEGG: rpc:RPC_1755 hypothetical protein.
   
 0.851
RPE_4795
SMART: WD-40 repeat protein; KEGG: rpc:RPC_4832 WD-40 repeat.
   
 0.851
RPE_0041
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_0038 amine oxidase.
   
 0.843
RPE_0491
Amine oxidase; TIGRFAM: Twin-arginine translocation pathway signal; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: rpc:RPC_0443 twin-arginine translocation pathway signal.
   
 0.843
RPE_0560
PFAM: SNF2-related protein; helicase domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; KEGG: xcb:XC_0536 helicase.
    
 0.839
RPE_2164
PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD/DEAH box helicase domain protein; KEGG: noc:Noc_0063 type III restriction enzyme, res subunit.
    
 0.839
Your Current Organism:
Rhodopseudomonas palustris BisA53
NCBI taxonomy Id: 316055
Other names: R. palustris BisA53, Rhodopseudomonas palustris str. BisA53, Rhodopseudomonas palustris strain BisA53
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